* Papers from MSS Project [#zc6f28b0]

** FY2011 (04/2011-03/2012) [#z10e9daf]

*** Original Papers (Refereed) [#gaf14110]
//

+ H. Mizuno and R. Yamamoto,
"Dynamical Heterogeneity in a Highly Supercooled Liquid under a Sheared Situation," 
submitted.
&br;&br;
+ Takahiro Murashima, Shugo Yasuda, Takashi Taniguchi, and Ryoichi Yamamoto, "Multiscale Simulations for Polymeric Flow", 
submitted.
//preprint, http://arxiv.org/abs/0910.2535
//"[[doi>:http://dx.doi.org/]]"
&br;&br;
+ Masayuki Uranagase and Ryoichi Yamamoto, 
"Electrostatic potential around a charged colloidal particle in an electrolyte solution with ion strong coupling," 
submitted. 
//preprint, http://arxiv.org/abs/0910.2535
//"[[doi>:http://dx.doi.org/]]"
&br;&br;
+ H. Mizuno and R. Yamamoto,
"Mechanical Responses and Stress Fluctuations of a Strongly Sheared Supercooled Liquid," 
submitted.
&br;&br;
+ H. Kobayashi and R. Yamamoto,
"Re-entrant transition in the shear viscosity of dilute rigid rod dispersions,"
submitted.
&br;&br;
----


+Y. Masubuchi, T. Uneyama and K. Saito, "A multi-scale simulation of polymer processing utilizing parameter-based bridging in melt rheology
", J. Appl. Polymer Sci., in print
&br;&br;
+K. Takahashi, T. Narumi, and K. Yasuoka, "Cutoff radius effect of the isotropic periodic sum method for polar molecules in a bulk water system", Molec. Simul., ''38''(5), 397-403(2012).
 [DOI : [[10.1080/08927022.2010.547857 >http://dx.doi.org/10.1080/08927022.2010.547857]] ]
[DOI:[[10.1080/08927022.2010.547857>http://dx.doi.org/10.1080/08927022.2010.547857]] ]
&br;&br;
+Y. Masubuchi, Y. Matsumiya, H. Watanabe, S. Shiromoto,M. Tsutsubuchi and Y. Togawa, "Primitive chain network simulations for comb-branched polymer under step shear deformations", Rheo. Acta, Online First 
[DOI:[[10.1007/s00397-011-0574-x>http://dx.doi.org/10.1007/s00397-011-0574-x]] ]
&br;&br;
+C. Chung, T. Uneyama, Y. Masubuchi and H. Watanabe, "Numerical study of chain conformation on shear banding using diffusive Rolie-Poly model", Rheologica Acta, Online First  
[DOI:[[10.1007/s00397-011-0554-1>http://dx.doi.org/10.1007/s00397-011-0554-1]] ]
&br;&br;
----
+ T. Murashima and T. Taniguchi,
"Multiscale simulation of history-dependent flow in entangled polymer melts",
Europhys. Lett. ''96'', 18002 (2011).
[DOI:[[10.1209/0295-5075/96/18002>http://dx.doi.org/10.1209/0295-5075/96/18002]] ]
&br;&br;
+ T. Taniguchi, Miho Yanagisawa and Masayuki Imai 
"Numerical investigations of the dynamics of two-component vesicles",
J. Phys. Cond. Matt. ''23'', 284103 (2011).
[DOI:[[10.1088/0953-8984/23/28/284103 >http://dx.doi.org/10.1088/0953-8984/23/28/284103]] ]
&br;&br;
+ S. Yasuda and R. Yamamoto,
"Dynamic rheology of a supercooled polymer melt in nonuniform oscillating flows between rapidly oscillating plates",
Phys. Rev. E ''84'', 031501 (2011).
[DOI:[[10.1103/PhysRevE.84.031501>http://dx.doi.org/10.1103/PhysRevE.84.031501]] ]
&br;&br;
+K. Z. Takahashi, T. Narumi, and K. Yasuoka, "Cutoff radius effect of the isotropic periodic sum and Wolf method in liquid-vapor interfaces of water", J. Chem. Phys., ''134'', 174112(2011). 
[DOI:[[10.1063/1.3578473>http://dx.doi.org/10.1063/1.3578473]] ]
&br;&br;
+R. Sakamaki, A. K. Sum, T. Narumi, R. Ohmura, and K. Yasuoka, "Thermodynamic Properties of Methane/Water Interface Predicted by Molecular Dynamics Simulations", J. Chem. Phys., ''134'', 144702(2011). 
[DOI:[[10.1063/1.3579480>http://dx.doi.org/10.1063/1.3579480]] ]
&br;&br;
//+R. Sakamaki, A. K. Sum, T. Narumi, and K. Yasuoka, "Molecular dynamics simulations of vapor/liquid coexistence using the nonpolarizable water models ", J. Chem. Phys., ''134'', 124708(2011). DOI : 10.1063/1.3574038
//&br;&br;
//+T. Narumi, T. Hamada, K. Nitadori, R. Sakamaki, and K. Yasuoka, "Fast quasi double-precision method with single-precision hardware to accelerate scientific applications", Int. J. Comput. Meth., ''8'', 561(2011). [DOI:[[10.1142/S0219876211002708>http://dx.doi.org/10.1142/S0219876211002708]] ]
//&br;&br;
+ T. Uneyama, "Single chain slip-spring model for fast rheology simulations of entangled polymers on GPU", Nihon Reoroji Gakkaishi (J. Soc. Rheol. Japan), ''39''(4), 135-152 (2011)
[DOI:[[10.1678/rheology.39.135>http://dx.doi.org/10.1678/rheology.39.135]]]
&br;&br;
+Y. Masubuchi, T. Yaoita, Y. Matsumiya and H. Watanabe, "Primitive chain network simulations for asymmetric star polymers", J. Chem. Phys., ''134'', 194905  (2011) [DOI:[[10.1063/1.3590276>http://dx.doi.org/10.1063/1.3590276]] ]
&br;&br;
+N. Rakkapao, V. Vao-soongnern, Y. Masubuchi and H. Watanabe, "Miscibility of chitosan/poly(ethylene oxide) blends and effect of doping alkali and alkali earth metal ions on chitosan/PEO interaction," Polymer, ''52''(12), 2618-2627 (2011).
[DOI:[[10.1016/j.polymer.2011.03.044 >http://dx.doi.org/10.1016/j.polymer.2011.03.044]] ]
&br;&br;
+T. Uneyama, K. Horio and H. Watanabe, "Anisotropic mobility model for polymers under shear and its linear response functions", Phys. Rev. E, ''83''(6), 061802 (2011).
[DOI:[[10.1103/PhysRevE.83.061802>http://dx.doi.org/10.1103/PhysRevE.83.061802]]]
&br;&br;
+T. Uneyama and K. Horio, "Equilibrium statistics of weakly slip-linked Gaussian polymer chains", J. Polym. Sci. B: Polym. Phys., ''49''(13), 966-977 (2011).
[DOI:[[10.1002/polb.22267>http://dx.doi.org/10.1002/polb.22267]]]
&br;&br;
+T. Miyata, Y. Yamamoto, T. Uneyama, Y. Nakamura and S.-L. Zhang, "Optimization of the multishift QR algorithm with coprocessors for non-Hermitian eigenvalue problems", East Asian J. Appl. Math., ''1''(2), 187-196 (2011).
[DOI:[[10.4208/eajam.300510.250311a>http://dx.doi.org/10.4208/eajam.300510.250311a]] ]
&br;&br;
+Y. Kawasaki, H. Watanabe and T. Uneyama, "A note for Kohlrausch-Williams-Watts relaxation function," Nihon Reoroji Gakkaishi (J. Soc. Rheol. Japan), ''39''(3), 127-131 (2011).
[DOI:[[10.1678/rheology.39.127>http://dx.doi.org/10.1678/rheology.39.127]]]
&br;&br;
+ H. Mizuno and R. Yamamoto,
"Dynamical heterogeneity in a highly supercooled liquid: Consistent calculations of correlation length, intensity, and lifetime,"
Phys.Rev.E, ''84'',011506(2011).&br;
[DOI: [[10.1103/PhysRevE.84.011506>http://link.aps.org/doi/10.1103/PhysRevE.84.011506]] ]
&br;&br;
+T. Uneyama and Y. Masubuchi, "Detailed Balance Condition and Effective
Free Energy in the Primitive Chain Network Model", J. Chem. Phys. 135(18),
184904 (2011).
[DOI:[[10.1063/1.3658775>http://dx.doi.org/10.1063/1.3658775]]]
&br;&br;
+K. Z. Takahashi, T. Narumi, and K. Yasuoka, "A combination of the tree-code and IPS method to simulate large scale systems by molecular dynamics", J. Chem. Phys., 135, 174108(2011). 
[DOI :[[10.1063/1.3658640>http://dx.doi.org/10.1063/1.3658640]]]
&br;&br;
+T. Akimoto, E. Yamamoto, K. Yasuoka, Y. Hirano, and M. Yasui, "Non-Gaussian Fluctuations Resulting from Power-Law Trapping in a Lipid Bilayer", Phys. Rev. Lett., ''107'', 178103(2011).
[DOI:[[10.1103/PhysRevLett.107.178103>http://dx.doi.org/10.1103/PhysRevLett.107.178103]]]
&br;&br;
+N. Arai, K. Yasuoka, and X. C. Zeng, "Nanochannel with Uniform and Janus Surfaces: Shear Thinning and Thickening in Surfactant Solution",
Langmuir, ''28''(5), 2866-2872(2012.
[DOI:[[10.1021/la2034643>http://dx.doi.org/10.1021/la2034643]]]
&br;&br;


*** Review, Proceedings, etc [#b81bb8eb]

+村島隆浩, 安田修悟, 谷口貴志, 山本量一 "ソフトマターの多階層・相互接続シミュレーション―高分子メルトのマルチスケールモデル―", 「工業材料」2012年4月号, ''60'', 27 (2012).
&br;&br;
+安田修悟、山本量一、"振動境界層流れにおける高分子液体の動的レオロジー特性"、
分子シミュレーション研究会会誌"アンサンブル", ''13'', 105 (2011).
&br;&br;
+畝山多加志, "高分子からみあい系のミクロ・メソスケール分子モデルの接続", 分子シミュレーション研究会会誌"アンサンブル" ''13''(3), 112-117 (2011).
&br;&br;
+村島隆浩, 谷口貴志, "高分子溶融体のミクロスコピックな状態変化とマクロスコピックな流動", 分子シミュレーション研究会会誌"アンサンブル" ''13''(3), 118 (2011).
&br;&br;
+畝山多加志, "からみあった高分子のレオロジーの分子理論", 高分子 ''60''(4), 199-200 (2011).
&br;&br;
+ 城本征治,筒渕雅明,東川芳晃,増渕雄一,”スタートアップせん断流れのPrimitive Chain Network シミュレーション”,成形加工,''23''(4), 211-215 (2011)
&br;&br;
+増渕雄一,”溶融体基本物性(研究総覧)”, 成形加工, ''23''(7), 414-417 (2011)

** FY2010 (04/2010-03/2011) [#x152e680]

*** Original Papers (Refereed) [#g3cc0241]

+ R. Sakamaki, A. K. Sum, T. Narumi, and K. Yasuoka, "Molecular dynamics simulations of vapor/liquid coexistence using the nonpolarizable water models ", J. Chem. Phys., ''134'', 124708 (2011). 
[DOI : [[10.1063/1.3574038>http://dx.doi.org/10.1063/1.3574038]] ]
&br;&br;
+ T. Narumi, T. Hamada, K. Nitadori, R. Sakamaki, and K. Yasuoka, "Fast Quasi Double-Precision Method with Single-Precision Hardware to Accelerate Scientific Applications", International Journal of Computational Methods, ''8''(3), 561-581 (2011).
[DOI : [[10.1142/S0219876211002708 >http://dx.doi.org/10.1142/S0219876211002708]] ]
&br;&br;
+ H. Kobayashi and R. Yamamoto,
"Implementation of Lees-Edwards periodic boundary conditions for direct numerical simulations of particle dispersions under shear flow",
J. Chem. Phys., ''134'', 064110 (2011).
[ DOI : [[10.1063/1.3537974 >http://dx.doi.org/10.1063/1.3537974]] ]
&br;&br;
+ Saeed Jafari, Ryoichi Yamamoto, and Mohamad Rahnama
"Lattice-Boltzmann method combined with smoothed-profile method for particulate suspensions",
Phys. Rev. E, ''83'', 026702 (2011).
[ DOI : [[10.1103/PhysRevE.83.026702 >http://dx.doi.org/10.1103/PhysRevE.83.026702]] ]
&br;&br;
+ K. Takahashi, T. Narumi, and K. Yasuoka, "Cutoff radius effect of isotropic periodic sum method in homogeneous system. II . Water", J. Chem. Phys., ''133'', 014109(2010). &br;
[DOI : [[10.1063/1.3462241>http://dx.doi.org/10.1063/1.3462241]] ]
&br;&br;
+ H. J. Myung, R. Sakamaki, K. J. Oh, T. Narumi, K. Yasuoka, and S. Lee, "Accelerating molecular dynamics simulation using graphics processing unit", 
Bulletin of the Korean Chemical Society, ''31'', 3639(2010).&br;
[DOI: [[10.5012/bkcs.2010.31.12.3639>http://dx.doi.org/10.5012/bkcs.2010.31.12.3639]] ]
&br;&br;
+ T. Narumi, K. Yasuoka, M. Taiji, F. Zerbetto, and S. Hoefinger, "Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3", 
Computer Journal, ''54''(7): 1181-1187, (2011). 
First published online November 3, 2010.
[DOI : [[10.1093/comjnl/bxq079>http://dx.doi.org/10.1093/comjnl/bxq079]] ]
&br;&br;
+ Yosuke Kadomae, Masataka Sugimoto, Takashi Taniguchi, and Kiyohito Koyama, 
"Discharge behaviors and jet profiles during Electrospinning of Poly(vinyl alcohol)", 
Polymer Engineering and Science, ''50'':  1788-1796, (2010). 
[DOI : [[10.1002/pen.21713 >http://dx.doi.org/10.1002/pen.21713]] ]
&br;&br;
+ N. Arai, K. Yasuoka, T. Koishi, and T. Ebisuzaki, "Asymmetric Brownian motor driven by bubble formation in a hydrophobic channel", ACS Nano, ''4'', 5905(2010). &br;
[DOI : [[10.1021/nn101855d>http://dx.doi.org/10.1021/nn101855d]] ]
&br;&br;
+ Hideyuki. Mizuno and Ryoichi. Yamamoto,
"Lifetime of dynamical heterogeneity in a highly supercooled liquid,"
Phys.Rev.E, ''82'',030501(R)(2010).&br;
[DOI: [[10.1103/PhysRevE.82.030501>http://link.aps.org/doi/10.1103/PhysRevE.82.030501]] ]
&br;&br;
+ Takuya Iwashita, Takuya Kumagai and Ryoichi Yamamoto,
"A direct numerical simulation method for complex modulus of
particle dispersions",
Eur. Phys. J. E, ''32'', 357-363 (2010). &br;
//preprint, http://arxiv.org/abs/0908.4505
[DOI: [[10.1140/epje/i2010-10638-7>http://dx.doi.org/10.1140/epje/i2010-10638-7]] ]
&br;&br;
+ Hideki Kobayashi and Ryoichi Yamamoto,
"Tumbling motion of a single chain in shear flow: a crossover from Brownian to non-Brownian behavior",
Phys.Rev.E, ''81'', 041807 (2010).&br;
[DOI: [[10.1103/PhysRevE.81.041807>http://dx.doi.org/10.1103/PhysRevE.81.041807]] ]
&br;&br;
+ Takahiro Murashima, Takashi Taniguchi, "Multiscale Lagrangian Fluid Dynamics Simulation for Polymeric Fluid", 
J. Polym. Sci. B, ''48'', 886-893 (2010).&br;
[DOI: [[10.1002/polb.21975>http://dx.doi.org/10.1002/polb.21975]] ]
&br;&br;
+ Y. Masubuchi, T. Uneyama, H. Watanabe, G. Ianniruberto, F. Greco, and G. Marrucci, "Structure of entangled polymer network from primitive chain network simulations", J. Chem. Phys. ''132'', 134902  (2010).&br;
[DOI: [[10.1063/1.3370346>http://dx.doi.org/10.1063/1.3370346]]]
&br;&br;
+ K. Furuichi, C. Nonomura, Y. Masubuchi and H. Watanabe, "Chain contraction and nonlinear stress damping in primitive chain network simulations", J Chem Phys, ''133'', 174902  (2010).&br;
[DOI: [[10.1063/1.3502681>http://dx.doi.org/10.1063/1.3502681]]]




*** Review, Proceedings, etc [#pd2b1d07]

+ 増渕雄一,”高分子成形加工の分子シミュレーション”,日本機械学会計算力学部門ニュースレター(CMD News Letter)''44'', 14-15 (2010)
&br;&br;
+ 増渕雄一,"高分子の高速分子シミュレーション法".アンサンブル(分子シミュレーション研究会誌),''12''(1), 2 - 7 (2010) 
&br;&br;
+ 増渕雄一,"溶融体基本特性(研究総覧)", 成形加工, ''22''(7), 358-361 (2010).&br;&br;
+増渕雄一,"高分子ダイナミクスのシミュレーション", 高分子, ''60''(2), 85-88 (2011)

** FY2009 (04/2009-03/2010) [#r2977cc9]

*** Original Papers (Refereed) [#oe59edaf]

+ Yasuya Nakayama, Kang. Kim, and Ryoichi Yamamoto, 
"Direct simulation of flowing colloidal dispersions by smoothed profile method", 
Advanced Powder Technology, ''21'', 206–211 (2010).&br;
[DOI: [[10.1016/j.apt.2009.11.011>http://dx.doi.org/10.1016/j.apt.2009.11.011]] ]
&br;&br;
+Shugo Yasuda and Ryoichi Yamamoto,
"Multiscale modeling and simulation for polymer melt flows between parallel plates", Phys. Rev. E ''81'', 036308 (2010). &br;
[DOI: [[10.1103/PhysRevE.81.036308>http://dx.doi.org/10.1103/PhysRevE.81.036308]] ]
&br;&br;
+ T. Iwashita and R. Yamamoto, 
"Direct numerical simulations for non-Newtonian rheology of concentrated particle dispersions",
Phys. Rev. E ''80'', 061402 (2009) &br;
[DOI: [[10.1103/PhysRevE.80.061402>http://dx.doi.org/10.1103/PhysRevE.80.061402]]]
&br;&br;
+Takahiro Murashima and Takashi Taniguchi, "Multiscale Lagrangian Fluid Dynamics Simulation for Polymeric Fluid", J. Pol. Sci. Part B, ''48'', pp. 886-893 (2010)&br;
[DOI:[[10.1002/polb.21975>http://dx.doi.org/10.1002/polb.21975]]]
//"[[doi>:http://dx.doi.org/]]"
&br;&br;
+Yosuke Kadomae, Yasuhide Maruyama, Masataka Sugimoto, Takashi Taniguchi and Kiyohito Koyama, 
"Relation between Tacticity and Fiber Diameter 
in Melt-Electrospinning of Polypropylene", 
Fibers and Polymers, ''10'', pp. 275-279 (2009)&br;
[DOI:[[10.1007/s12221-009-0275-6 >http://dx.doi.org/10.1007/s12221-009-0275-6]] ]
&br;&br;
+ R. Yamamoto, Y. Nakayama, and K. Kim,
"Smoothed profile method to simulate colloidal particles 
in complex fluids",
Int. J. Mod. Phys. C, ''20'', 1457-1465 (2009). &br;
[DOI: [[10.1142/S0129183109014515>http://dx.doi.org/10.1142/S0129183109014515]] ]
&br;&br;
+Yuichi Masubuchi, Kenji Furuichi, Kazushi Horio, Takashi Uneyama, Hiroshi Watanabe, Giovanni Ianniruberto, Francesco Greco, and Giuseppe Marrucci,
"Primitive chain network simulations for entangled DNA solutions", J. Chem. Phys. ''131'', 114906, (2009) &br;
[DOI: [[10.1063/1.3225994>http://dx.doi.org/doi:10.1063/1.3225994]]]
&br;&br;
+Satoru Okuda, Yasuhiro. Inoue, Yuichi Masubuchi, Takashi Uneyama and Masaki Hojo, "Wall boundary model for primitive chain network simulations", J. Chem. Phys. ''130''(21), 214907, (2009).&br;
[DOI: [[10.1063/1.3140941>http://dx.doi.org/doi:10.1063/1.3140941]]]
&br;&br;
+Takashi Uneyama, Yuichi Masubuchi, Kazushi Horio, Yumi Matsumiya, Hiroshi Watanabe, Jai A. Pathak, C. Michael Roland, "A theoretical analysis of rheodielectric response of type-A polymer chains",  J. Polym. Sci. B: Polym. Phys., ''47''(11), 1039-1057, (2009)&br;
[DOI: [[10.1002/polb.21708>http://dx.doi.org/doi:10.1002/polb.21708]]]
&br;&br;
+Yuichi Masubuchi, Takashi Uneyama, Hiroshi Watanabe, Giovanni Ianniruberto, Francesco Greco and Giuseppe Marrucci, "Primitive Chain Network Simulations of Conformational Relaxation for Individual Molecules in the Entangled State. II. Retraction from Stretched States", Nihon Reoroji Gakkaishi (J. Soc. Rheol. Japan), ''37''(2), 65-68 (2009).&br;
[DOI: [[10.1678/rheology.37.65>http://dx.doi.org/doi:10.1678/rheology.37.65]]]
&br;&br;
+Takashi Uneyama, "Coarse-Grained Brownian Dynamics Simulations for Symmetric Diblock Copolymer Melts Based on the Soft Dumbbell Model", Nihon Reoroji Gakkaishi (J. Soc. Rheol. Japan), ''37''(2), 81-90 (2009).&br;
[DOI: [[10.1678/rheology.37.81>http://dx.doi.org/doi:10.1678/rheology.37.81]]]
&br;&br;
+ Shugo Yasuda and Ryoichi Yamamoto, "Rheological properties of polymer melt between rapidly oscillating plates: an application of multiscale modeling", EPL ''86'', 18002 (2009). &br;
[DOI: [[10.1209/0295-5075/86/18002>http://dx.doi.org/10.1209/0295-5075/86/18002]]]
&br;&br;
+ Takuya Iwashita, Yasuya Nakayama, and Ryoichi Yamamoto,
"Velocity autocorrelation function of fluctuating particles in
incompressible fluids, -Toward direct numerical simulation of particle dispersions-", 
Prog. Theor. Phys. Suppl. ''178'', 86-91 (2009). &br;
[DOI: [[10.1143/PTPS.178.86 >http://dx.doi.org/10.1143/PTPS.178.86]]]
&br;&br;
+ E. Dushanov, Kh. Kholmurodov, G. Aru, V. Korenkov, W. Smith, Y. Ohno,
T. Narumi, G. Morimoto, M. Taiji, and K. Yasuoka,
"JINR CICC in Computational Chemistry and Nanotechnology Problems:
DL_POLY Performance for Different Communication Architectures",
Physics of Particles and Nuclei Letters, ''6''(3), 251, (2009).&br;
[DOI: [[10.1134/S154747710903011X >http://dx.doi.org/10.1134/S154747710903011X]]]
&br;&br;
+ Narumi, T., Yasuoka, K., Taiji, M., and Höfinger, S., "Current Performance Gains from Utilizing the GPU or the ASIC MDGRAPE-3 within an Enhanced Poisson Boltzmann Approach", J. Comput Chem., ''30'', 2351(2009).&br;
[DOI: [[10.1002/jcc.21257 >http://dx.doi.org/10.1002/jcc.21257]]]
&br;&br;
+ Yokota, R., Narumi, T., Sakamaki, R., Kameoka, S., Obi, S., and Yasuoka, K. , "Fast Multipole Methods on a Cluster of GPUs for the Meshless Simulation of Turbulence Computer Physics Communications", Comput. Phys. Commun., ''180'', 2066 (2009).&br;
[DOI: [[10.1016/j.cpc.2009.06.009 >http://dx.doi.org/10.1016/j.cpc.2009.06.009]]]
&br;&br;
+ 坂牧隆司,成見哲,泰岡顕治,"グラフィックカードを用いた水表面張力の高速分子動力学シミュレーション", 情報処理学会論文誌 コンピューティングシステム,''2''(2), 89-97, (2009).
&br;&br;
+Yuichi Masubuchi, Hiroshi Watanabe, Giovanni Ianniruberto, Francesco Greco, and Giuseppe Marrucci, " Primitive Chain Network Simulations for Particle Dispersed Polymers ", International Journal of Polymers and Technologies, ''1''(1), 17-21, (2009).
&br;&br;
+増渕雄一,"プリミティブチェーンネットワークシミュレーションによる高分子材料の応力緩和挙動の予測", 日本ゴム協会誌,''82''(11), 459-463 (2009)

*** Review, Proceedings, etc [#b843a4ec]

+ Tsuyoshi Hamada, Rio Yokota, Keigo Nitadori, Tetsu Narumi,
Kenji Yasuoka, Makoto Taiji, Kiyoshi Oguri,
"42 TFlops Hierarchical N-body Simulations on GPUs with Applications in
both Astrophysics and Turbulence",
Proceedings of the SC2009, USB memory, Portland, USA, (2009).
[DOI: [[10.1145/1654059.1654123 >http://dx.doi.org/10.1145/1654059.1654123]]]
&br;&br;
+ 安田修悟,山本量一,
"ソフトマターのマルチスケールシミュレーション:高分子溶液の流動解析への応用",
プラズマ・核融合学会誌 ''85''-09, 607 (2009).

** FY2008 (04/2008-03/2009) [#gef615ef]

*** Original Papers (Refereed) [#pddca934]

+ Takuya Iwashita and Ryoichi Yamamoto,
"Short-time motion of Brownian particles in a shear flow",
Phys. Rev. E ''79'', 031401 (2009).
[DOI: [[10.1103/PhysRevE.79.031401>http://dx.doi.org/10.1103/PhysRevE.79.031401]]]
&br;&br;
//
+ Yosuke Kadomae, Masahiro Amagasa, Masataka Sugimoto, 
Takashi Taniguchi and Kiyohito Koyama,
"Effect of electric current on beads formation 
in electrospinning of poly(vinyl alcohol)",
International Polymer Processing  ''23'', 377-384 (2008).
[DOI: [[10.3139/217.2140>http://dx.doi.org/10.3139/217.2140]]]
&br;&br;
//
+ Shugo Yasuda and Ryoichi Yamamoto,
"A Model for Hybrid Simulations of Molecular Dynamics and Computational Fluid Dynamics",
Phys. Fluids ''20'', 113101 (2008).
[DOI: [[10.1063/1.3003218>http://dx.doi.org/10.1063/1.3003218]]]
&br;&br;
//
+ Tetsu Narumi, Shun Kameoka, Makoto Taiji, and Kenji Yasuoka, "Accelerating Molecular Dynamics Simulation on PLAYSTATION 3 Platform using "Virtual-GRAPE" Programming Model, SIAM Journal on Scientific Computing, ''30'', 3108-3125 (2008). 
[DOI: [[10.1137/070692054 >http://dx.doi.org/10.1137/070692054]]]
&br;&br;
+ Yasuya Nakayama, Kang Kim and Ryoichi Yamamoto,
"Smoothed Profile Method for Direct Simulation of Flowing (Charged) Colloids in Solvents",
AES Technical Reviews International Journal of Nano and Advanced Engineering Materials, ''1'', 21-28 (2008).
&br;&br;
+ Toshiki Mima, Tetsu Narumi, Shun Kameoka, and Kenji Yasuoka, "Cell size dependence of orientational order of uniaxial liquid", Molecular Simulation, ''34'', 761-773(2008).
[DOI: [[10.1080/08927020802256058 >http://dx.doi.org/10.1080/08927020802256058]]]
&br;&br;
+ Ryoichi Yamamoto, Kang Kim, Yasuya Nakayama, Kunimasa Miyazaki, David R. Reichman,
"On the Role of Hydrodynamic Interactions in Colloidal Gelation",
J. Phys. Soc. Jpn., ''77'', 084804 (2008).
[DOI: [[10.1143/JPSJ.77.084804>http://dx.doi.org/10.1143/JPSJ.77.084804]]]
&br;&br;
+ Yuichi Masubuchi, Giovanni Ianniruberto, Francesco Greco, and Giuseppe Marrucci, "Primitive Chain Network Simulations for Bidisperse Linear Polymers", Int. J. Nano Adv. Eng. Mat., Part A. ''1''(1), 35-40 (2008).
&br;&br;
+ Quan Chen, Yumi Matsumiya, Yuichi Masubuchi, Hiroshi Watanabe, and Tadashi Inoue, "Component Dynamics in Polyisoprene/Poly(4-tert-butylstyrene) Miscible Blends," Macromolecules, ''41'', 8694-8711, (2008)
[DOI: [[10.1021/ma8013417>http://dx.doi.org/doi:10.1021/ma8013417]]]
&br;&br;
+ Kenji Furuichi, Chisato Nonomura, Yuichi Masubuchi, Hiroshi Watanabe, Giovanni Ianniruberto, Francesco Greco, and Giuseppe Marrucci, "Entangled polymer orientation and stretch under large step shear deformations in primitive chain network simulations," Rheologica Acta, ''47'', 591-599, (2008)
[DOI: [[10.1007/s00397-008-0258-3>http://dx.doi.org/doi:10.1007/s00397-008-0258-3]]]
&br;&br;
+ Yuichi Masubuchi, Hiroshi Watanabe, Giovanni Ianniruberto, Francesco Greco, and Giuseppe Marrucci, "Comparison among Slip-Link Simulations of Bidisperse Linear Polymer Melts," Macromolecules, ''41'', 8275-8280, (2008)
[DOI: [[10.1021/ma800954q>http://dx.doi.org/doi:10.1021/ma800954q]]]
&br;&br;
+ Yuichi Masubuchi, Hiroshi Watanabe, Giovanni Ianniruberto, Francesco Greco, and Giuseppe Marrucci, "Primitive chain network simulations of conformational relaxation for individual molecules in the entangled state," NIHON REOROJI GAKKAISHI (J. Soc. Rheol. Jpn.) , ''36'', 181-185, (2008)
[DOI: [[10.1678/rheology.37.65>http://dx.doi.org/doi:10.1678/rheology.37.65]]]
&br;&br;
+ Takatoshi Yaoita, Takeharu Isaki, Yuichi Masubuchi, Hiroshi Watanabe, Giovanni Ianniruberto, Francesco Greco, and Giuseppe Marrucci, "Statics, linear, and nonlinear dynamics of entangled polystyrene melts simulated through the primitive chain network model," J Chem Phys, ''128'', 154901 (2008)
[DOI: [[10.1063/1.2899653>http://dx.doi.org/doi:10.1063/1.2899653]]]
&br;&br;
+ Noriyoshi Arai, Kenji Yasuoka, X. C. Zeng, "Self-Assembly of Surfactants and Polymorphic Transition in Nanotubes", J. Am. Chem. Soc., ''130'',  7916-7920 (2008).
[DOI: [[10.1021/ja7108739 >http://dx.doi.org/10.1021/ja7108739]]]
&br;&br;
+ Yasuya Nakayama, Kang Kim and Ryoichi Yamamoto,
"Simulating (electro) hydrodynamic effects in colloidal dispersions: smoothed profile method",
Eur. Phys. J. E, ''26'', 361-368 (2008).
[DOI: [[10.1140/epje/i2007-10332-y>http://dx.doi.org/10.1140/epje/i2007-10332-y]]]
&br;&br;
+ Takuya Iwashita, Yasuya Nakayama, and Ryoichi Yamamoto,
"A numerical model for Brownian particles fluctuating in incompressible fluids", 
J. Phys. Soc. Jpn., ''77'', 074007, (2008). 
[DOI: [[10.1143/JPSJ.77.074007>http://dx.doi.org/10.1143/JPSJ.77.074007]]]

 
*** Review, Proceedings, etc [#jb7a71fe]

+ Tetsu Narumi, Tsuyoshi Hamada, Keigo Nitadori, Ryuji Sakamaki, Shun Kameoka, Kenji Yasuoka,
"High-Performance Quasi Double-Precision Method using Single-Precision Hardware for Molecular Dynamics Simulations with GPUs",
Proceedings of HPC Asia 2009, Kaohsiung, Taiwan, in press.
&br;&br;
+ Tetsu Narumi, Ryuji Sakamaki, Shun Kameoka, Kenji Yasuoka,
"Overheads in Accelerating Molecular Dynamics Simulations with GPUs",
Proceedings of the 9th International Conference on Parallel and Distributed Computing, Applications, and Technologies (PDCAT’08), pp. 143-150, Dunedin, New Zealand, (2008).
[DOI: [[10.1109/PDCAT.2008.68 >http://dx.doi.org/10.1109/PDCAT.2008.68]]]
&br;&br;
+ 名嘉山祥也, 金鋼, 岩下拓哉, 山本量一,
"コロイド分散系の直接数値シミュレーション",
九州大学応用力学研究所研究集会報告「乱流現象及び多自由度系の動力学、構造と統計法則」19ME-S7. (2008).

** FY2007 (04/2007-03/2008) [#z33fc58d]

*** Original Papers (Refereed) [#n5806bab]

+ M. Moriya, K. Oogo, Y. Masubuchi and T. Asakura, "Flow analysis of aqueous solution of silk fibroin in the spinneret of Bombyx mori silkworm by combination of viscosity measurement and finite element method calculation", Polymer, ''49''(4), 952-956 (2008)
[DOI: [[10.1016/j.polymer.2007.12.032>http://dx.doi.org/doi:10.1016/j.polymer.2007.12.032]]]
&br;&br;
+ Y. Masubuchi, G. Ianniruberto, F. Greco and G. Marrucci, "Unit of molecular weight, stress and time of the primitive chain network simulations for polymer melts ", J. Non-newtonian Fluid Mech., ''149'' (1-3), 87-92 (2008).
[DOI: [[10.1016/j.jnnfm.2007.02.014>http://dx.doi.org/doi:10.1016/j.jnnfm.2007.02.014]]]
&br;&br;
+ Noriyoshi Arai, Kenji Yasuoka, Yuichi Masubuchi, "Spontaneous self-assembly process for threadlike micelles", J. Chem. Phys., ''126'', 244905 (2007).
[DOI: [[10.1063/1.2747240 >http://dx.doi.org/10.1063/1.2747240]]]
&br;&br;
+ N. Hosono, Y. Masubuchi, H. Furukawa and T. Watanabe, "A molecular dynamics simulation study on 
polymer networks of end-linked flexible or rigid chains", J. Chem. Phys., ''127'', 164905, (2007)
[DOI: [[10.1063/1.2790007>http://dx.doi.org/doi:10.1063/1.2790007]]]
&br;&br;
+ Kazuaki Takahashi, Kenji Yasuoka, and Tetsu Narumi, "Cutoff radius effect of isotropic periodic sum method for transport coefficients of Lennard-Jones liquid", J. Chem. Phys., ''127'', 114511 (2007).
[DOI: [[10.1063/1.2775929 >http://dx.doi.org/10.1063/1.2775929]]]
&br;&br;
+ Ryoichi Yamamoto, Kang Kim, and Yasuya Nakayama,
"Strict simulations of non-equilibrium dynamics of colloids",
Colloids and Surfaces A: Physicochemical and Engineering Aspects, ''311'', 42-47 (2007). 
[DOI: [[10.1016/j.colsurfa.2007.08.041 >http://dx.doi.org/10.1016/j.colsurfa.2007.08.041]]]


*** Review, Proceedings, etc [#wa52343e]

+ 山本量一, "コロイド系のハイブリッドシミュレーション", 高分子, ''56'', 1001 (2007).
&br;&br;
+ 山本量一, "荷電コロイド分散系の計算機シミュレーション", セラミックス, ''43'', 77-86 (2008). 
&br;&br;
+ 山本量一, 米谷慎, 奥薗透, 福田順一, "液晶の計算機シミュレーション", 液晶, ''11'', 259-266 (2007).
&br;&br;
+ 名嘉山祥也, 金鋼, 山本量一, "コロイド分散系の直接数値シミュレーション", ケミカルエンジニヤリング, ''52'', 340-345 (2007).
&br;&br;
+ Y. Nakayama, K. Kim and R. Yamamoto,
"Smoothed Profile Method for Direct Simulation of Flowing (Charged) Colloids in Solvents",
Proceedings of AES - ATEMA First International Conference(2007) pp.277-284 (2007). 

** FY2006 (10/2006-03/2007) [#p259e561]

*** Original Papers (Refereed) [#n5806bab]

+ 名嘉山祥也, 金鋼, 山本量一, "Smoothed Profile 法によるコロイド系の直接数値シミュレーション", 粉体工学会誌, ''44'', 191-197 (2007).
&br;&br;
+ Ryoichi Yamamoto, Kim kang, and Yasuya Nakayama, "KAPSEL: Kyoto Advanced Particle Simulator for ELectrohydrodynamics -Toward Direct Numerical Simulations of Colloidal Dispersions-", KONA, ''24'', 167-182 (2006). [ [[PDF:http://www.kona.or.jp/search/24_167.pdf]] ]

*** Review, Proceedings, etc [#wa52343e]

&br;
+ 金鋼, 名嘉山祥也, 山本量一, "荷電コロイド分散系の直接数値シミュレーション -KAPSELの原理と操作-", 粉体工学会誌, ''44'', 28-36 (2007).